Package owltools.gaf

Processing of GO Gene Association Files

See: Description

Class Summary

Class	Description
AnnotationSource
Bioentity
BioentityDocument
EcoTools	Deprecated use EcoMapper, TraversingEcoMapper and EcoMapperFactory.
ExtensionExpression	Corresponds to col16 in GAF2.0
GafDocument	Representation of a gene annotation file (GAF).
GeneAnnotation	Representation of a gene annotation.
IdMapping
TaxonTools	Methods to simplify the work with the taxons.

Package owltools.gaf Description

Processing of GO Gene Association Files

This package contains gaf file parser GAFParser, and also contains GafObjectsBuilder to build Document Object Model from a gaf file. See owltools.gaf.GAFParserTest and owltools.gaf.GafObjectsBuilderTest classes to see examples how to use GafParser and GafObjectsBuilder classes.