| owltools.sim.AvgInformationContentBestMatchesSimilarity |
| owltools.sim.AvgInformationContentLCSSimilarity |
| owltools.ontologyrelease.BuildVersionId |
| org.geneontology.lego.model.CellularLocationTools |
| owltools.gaf.inference.CompositionalClassPredictor |
| owltools.gaf.EcoTools
|
| owltools.ontologyrelease.GetOntologyId |
| owltools.yaml.golrconfig.GOlrDynamicField |
| owltools.yaml.golrconfig.GOlrFixedField |
| owltools.reasoner.LazyExpressionMaterializingReasoner
This is no longer necessary as ELK 0.4 supports queries using class expressions.
|
| owltools.reasoner.LazyExpressionMaterializingReasonerFactory |
| org.geneontology.lego.dot.LegoDotWriter |
| org.geneontology.lego.model2.LegoGraph |
| org.geneontology.lego.model.LegoLink |
| org.geneontology.lego.model.LegoMetadata |
| org.geneontology.lego.model.LegoNode |
| org.geneontology.lego.json.LegoShuntGraphTool |
| org.geneontology.lego.model.LegoTools |
| org.geneontology.lego.model2.LegoUnit |
| org.geneontology.lego.model2.LegoUnitTools |
| owltools.ontologyrelease.OboProperty |
| owltools.solrj.OntologySolrLoader |
| org.geneontology.lego.dot.StringTools |
| owltools.gaf.inference.TaxonConstraintsEngine
There is now a taxon checks using an OWL resoner. This
implementation may over-report violations, i.e. taxon constrains
should not be propagated over regulates relations.
|