org.geneontology.lego.model

Class LegoNode

java.lang.Object

org.geneontology.lego.model.LegoMetadata

org.geneontology.lego.model.LegoNode

Deprecated.

@Deprecated
public class LegoNode
extends LegoMetadata

Constructor Summary

Constructors

Constructor and Description
LegoNode(org.semanticweb.owlapi.model.OWLNamedIndividual individual, org.semanticweb.owlapi.model.OWLClassExpression type) Deprecated.

Method Summary

Methods

Modifier and Type	Method and Description
org.semanticweb.owlapi.model.OWLClass	getActiveEntity() Deprecated.
Collection<org.semanticweb.owlapi.model.OWLClassExpression>	getCellularLocation() Deprecated.
org.semanticweb.owlapi.model.IRI	getId() Deprecated.
org.semanticweb.owlapi.model.OWLNamedIndividual	getIndividual() Deprecated.
Collection<LegoLink>	getLinks() Deprecated.
org.semanticweb.owlapi.model.OWLClassExpression	getType() Deprecated.
Collection<org.semanticweb.owlapi.model.OWLClassExpression>	getUnknowns() Deprecated.
boolean	isBp() Deprecated.
boolean	isCmf() Deprecated.
boolean	isMf() Deprecated.
void	setActiveEntity(org.semanticweb.owlapi.model.OWLClass activeEntity) Deprecated.
void	setBp(boolean bp) Deprecated.
void	setCellularLocation(Collection<org.semanticweb.owlapi.model.OWLClassExpression> cellularLocation) Deprecated.
void	setCmf(boolean cmf) Deprecated.
void	setLinks(Collection<LegoLink> links) Deprecated.
void	setMf(boolean mf) Deprecated.
void	setUnknowns(Collection<org.semanticweb.owlapi.model.OWLClassExpression> unknowns) Deprecated.

Methods inherited from class org.geneontology.lego.model.LegoMetadata

extractMetadata, extractMetadata, getContributors, getDates, getEvidence, getSources, getTitle, setContributors, setDates, setEvidence, setSources

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LegoNode

public LegoNode(org.semanticweb.owlapi.model.OWLNamedIndividual individual,
        org.semanticweb.owlapi.model.OWLClassExpression type)

Deprecated.

Parameters:

individual -

type -

Method Detail

getId

public org.semanticweb.owlapi.model.IRI getId()

Deprecated.

getIndividual

public org.semanticweb.owlapi.model.OWLNamedIndividual getIndividual()

Deprecated.

Returns:

the individual

getType

public org.semanticweb.owlapi.model.OWLClassExpression getType()

Deprecated.

Returns:

the type

getActiveEntity

public org.semanticweb.owlapi.model.OWLClass getActiveEntity()

Deprecated.

Returns:

the activeEntity

setActiveEntity

public void setActiveEntity(org.semanticweb.owlapi.model.OWLClass activeEntity)

Deprecated.

Parameters:

activeEntity - the activeEntity to set

getCellularLocation

public Collection<org.semanticweb.owlapi.model.OWLClassExpression> getCellularLocation()

Deprecated.

Returns:

the cellularLocation

setCellularLocation

public void setCellularLocation(Collection<org.semanticweb.owlapi.model.OWLClassExpression> cellularLocation)

Deprecated.

Parameters:

cellularLocation - the cellularLocation to set

getUnknowns

public Collection<org.semanticweb.owlapi.model.OWLClassExpression> getUnknowns()

Deprecated.

Returns:

the unknowns

setUnknowns

public void setUnknowns(Collection<org.semanticweb.owlapi.model.OWLClassExpression> unknowns)

Deprecated.

Parameters:

unknowns - the unknowns to set

getLinks

public Collection<LegoLink> getLinks()

Deprecated.

Returns:

the links

setLinks

public void setLinks(Collection<LegoLink> links)

Deprecated.

Parameters:

links - the links to set

isCmf

public boolean isCmf()

Deprecated.

Returns:

the cmf

setCmf

public void setCmf(boolean cmf)

Deprecated.

Parameters:

cmf - the cmf to set

isMf

public boolean isMf()

Deprecated.

Returns:

the mf

setMf

public void setMf(boolean mf)

Deprecated.

Parameters:

mf - the mf to set

isBp

public boolean isBp()

Deprecated.

Returns:

the bp

setBp

public void setBp(boolean bp)

Deprecated.

Parameters:

bp - the bp to set