owltools.gaf

Class TaxonTools

java.lang.Object

owltools.gaf.TaxonTools

public class TaxonTools
extends Object

Methods to simplify the work with the taxons.

Field Summary

Fields

Modifier and Type	Field and Description
static String	NCBI
static String	TAXON_PREFIX
static String	TAXON_PURL

Constructor Summary

Constructors

Constructor and Description
TaxonTools(org.semanticweb.owlapi.reasoner.OWLReasoner reasoner, boolean disposeReasoner) Create an instance for the given reasoner.

Method Summary

Methods

Modifier and Type	Method and Description
void	dispose() Clean up the internal data structures, usually done as last operation.
Set<org.semanticweb.owlapi.model.OWLClass>	getAncestors(org.semanticweb.owlapi.model.OWLClass taxonClass, boolean reflexive) Wrapper method for the reasoner.
Set<org.semanticweb.owlapi.model.OWLClass>	getDescendents(Set<org.semanticweb.owlapi.model.OWLClass> sources, boolean reflexive) Wrapper method for the reasoner

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

TAXON_PURL

public static final String TAXON_PURL

See Also:

Constant Field Values

NCBI

public static final String NCBI

See Also:

Constant Field Values

TAXON_PREFIX

public static final String TAXON_PREFIX

See Also:

Constant Field Values

Constructor Detail

TaxonTools

public TaxonTools(org.semanticweb.owlapi.reasoner.OWLReasoner reasoner,
          boolean disposeReasoner)
           throws org.semanticweb.owlapi.model.UnknownOWLOntologyException,
                  org.semanticweb.owlapi.model.OWLOntologyCreationException

Create an instance for the given reasoner.

Parameters:

reasoner -

disposeReasoner - set to true, if the reasoner should also be disposed

Throws:

org.semanticweb.owlapi.model.UnknownOWLOntologyException

org.semanticweb.owlapi.model.OWLOntologyCreationException

See Also:

dispose()

Method Detail

getAncestors

public Set<org.semanticweb.owlapi.model.OWLClass> getAncestors(org.semanticweb.owlapi.model.OWLClass taxonClass,
                                                      boolean reflexive)

Wrapper method for the reasoner.

Parameters:

taxonClass -

reflexive -

Returns:

set of super classes

getDescendents

public Set<org.semanticweb.owlapi.model.OWLClass> getDescendents(Set<org.semanticweb.owlapi.model.OWLClass> sources,
                                                        boolean reflexive)

Wrapper method for the reasoner

Parameters:

sources -

reflexive -

Returns:

set of sub classes

dispose

public void dispose()

Clean up the internal data structures, usually done as last operation.