owltools.sim2.preprocessor

Interface SimPreProcessor

All Known Implementing Classes:

AbstractOBOSimPreProcessor, AbstractSimPreProcessor, AutomaticSimPreProcessor, BruteForceSimPreProcessor, ExpressionSimPreProcessor, GOSimPreProcessor, LCSEnabledSimPreProcessor, NullSimPreProcessor, PhenoSimHQEPreProcessor, PropertyViewSimPreProcessor

public interface SimPreProcessor

An ontology pre-processor will take an input ontology, apply a series of transforms, and generate an output ontology The output ontology may in many cases be the same as the input ontology

Author:

cjm

Method Summary

Methods

Modifier and Type	Method and Description
void	dispose() Clean the current instance, i.e.
org.semanticweb.owlapi.model.OWLObjectProperty	getAboxProperty()
org.semanticweb.owlapi.model.OWLOntology	getInputOntology()
org.semanticweb.owlapi.model.OWLClassExpression	getLowestCommonSubsumer(org.semanticweb.owlapi.model.OWLClassExpression a, org.semanticweb.owlapi.model.OWLClassExpression b) Returns the LCS of a and b.
org.semanticweb.owlapi.model.OWLOntology	getOutputOntology()
org.semanticweb.owlapi.reasoner.OWLReasoner	getReasoner()
Set<org.semanticweb.owlapi.model.OWLClass>	getViewClasses(org.semanticweb.owlapi.model.OWLClass c) The pre-processor may generate view classes.
void	preprocess() Generate output ontology
void	setInputOntology(org.semanticweb.owlapi.model.OWLOntology inputOntology) sets the input ontology.
void	setOutputOntology(org.semanticweb.owlapi.model.OWLOntology outputOntology) sets the output ontology.
void	setOWLPrettyPrinter(OWLPrettyPrinter owlpp)
void	setReasoner(org.semanticweb.owlapi.reasoner.OWLReasoner reasoner) Sets the reasoner.
void	setReasonerFactory(org.semanticweb.owlapi.reasoner.OWLReasonerFactory reasonerFactory) Sets the reasoner factory.
void	setSimProperties(Properties simProperties)

Method Detail

preprocess

void preprocess()

Generate output ontology

getViewClasses

Set<org.semanticweb.owlapi.model.OWLClass> getViewClasses(org.semanticweb.owlapi.model.OWLClass c)

The pre-processor may generate view classes. For example, it may generate a class equivalent to "P some C" for every input class C and some property P. This method returns all the view classes generated for any given input ontology class

Parameters:

c -

Returns:

classes

getInputOntology

org.semanticweb.owlapi.model.OWLOntology getInputOntology()

Returns:

input ontology

setInputOntology

void setInputOntology(org.semanticweb.owlapi.model.OWLOntology inputOntology)

sets the input ontology. Should be done prior to pre-processing

Parameters:

inputOntology -

getOutputOntology

org.semanticweb.owlapi.model.OWLOntology getOutputOntology()

Returns:

output ontology

setOutputOntology

void setOutputOntology(org.semanticweb.owlapi.model.OWLOntology outputOntology)

sets the output ontology. Should be done prior to pre-processing. Note that this can have the same value as the input ontology. In this case all new declarations and axioms are added to the same ontology

Parameters:

outputOntology -

setReasonerFactory

void setReasonerFactory(org.semanticweb.owlapi.reasoner.OWLReasonerFactory reasonerFactory)

Sets the reasoner factory. If this is called, then setReasoner() does not need to be explicitly called

Parameters:

reasonerFactory -

getReasoner

org.semanticweb.owlapi.reasoner.OWLReasoner getReasoner()

Returns:

reasoner object. Typically an Elk instance

See Also:

dispose()

setReasoner

void setReasoner(org.semanticweb.owlapi.reasoner.OWLReasoner reasoner)

Sets the reasoner. The reasoner should have been instantiated with the output ontology

Parameters:

reasoner -

See Also:

dispose()

getLowestCommonSubsumer

org.semanticweb.owlapi.model.OWLClassExpression getLowestCommonSubsumer(org.semanticweb.owlapi.model.OWLClassExpression a,
                                                                      org.semanticweb.owlapi.model.OWLClassExpression b)

Returns the LCS of a and b. If a and b have multiple named LCSs, then the LCS is the class intersection of all these

Parameters:

a -

b -

Returns:

LCS

setOWLPrettyPrinter

void setOWLPrettyPrinter(OWLPrettyPrinter owlpp)

setSimProperties

void setSimProperties(Properties simProperties)

getAboxProperty

org.semanticweb.owlapi.model.OWLObjectProperty getAboxProperty()

dispose

void dispose()

Clean the current instance, i.e. dispose of the reasoner.

See Also:

getReasoner()