owltools.phenolog

Class Pheno

java.lang.Object

owltools.phenolog.Pheno

All Implemented Interfaces:

Comparable<Pheno>

public class Pheno
extends Object
implements Comparable<Pheno>

represents an attribute-bearing entity; for example, a phenotype.

Constructor Summary

Constructors

Constructor and Description
Pheno()
Pheno(String id)
Pheno(String id, String label)
Pheno(String id, String label, HashSet<Individual> individuals)
Pheno(String id, String label, HashSet<Individual> individuals, boolean isFromTC)

Method Summary

Methods

Modifier and Type	Method and Description
int	compareTo(Pheno p)
boolean	equals(Object aPheno)
HashSet<Pheno>	getancestors()
Pheno	getClosest()
double	getClosestDistance()
int	getClosestOverlap()
HashSet<IndividualPair>	getClosestOverlapPairs()
String	getId()
HashSet<Individual>	getIndividuals()
boolean	getisFromTC()
String	getLabel()
int	getNonTCIndividualSize()
int	hashCode()
void	setancestors(HashSet<Pheno> ancestors)
void	setClosest(Pheno closest)
void	setClosestDistance(double closestdistance)
void	setClosestOverlap(int closestoverlap)
void	setClosestOverlapPairs(HashSet<IndividualPair> hsip)
void	setId(String id)
void	setIndividuals(HashSet<Individual> individuals)
void	setisFromTC(boolean isFromTC)
void	setLabel(String label)
void	setNonTCIndividualSize(int NonTCIndividualSize)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Pheno

public Pheno()

Pheno

public Pheno(String id)

Pheno

public Pheno(String id,
     String label)

Pheno

public Pheno(String id,
     String label,
     HashSet<Individual> individuals)

Pheno

public Pheno(String id,
     String label,
     HashSet<Individual> individuals,
     boolean isFromTC)

Method Detail

equals

public boolean equals(Object aPheno)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

compareTo

public int compareTo(Pheno p)

Specified by:

compareTo in interface Comparable<Pheno>

getId

public String getId()

setId

public void setId(String id)

getLabel

public String getLabel()

setLabel

public void setLabel(String label)

setClosest

public void setClosest(Pheno closest)

getClosest

public Pheno getClosest()

setClosestDistance

public void setClosestDistance(double closestdistance)

getClosestDistance

public double getClosestDistance()

setClosestOverlap

public void setClosestOverlap(int closestoverlap)

getClosestOverlap

public int getClosestOverlap()

setClosestOverlapPairs

public void setClosestOverlapPairs(HashSet<IndividualPair> hsip)

getClosestOverlapPairs

public HashSet<IndividualPair> getClosestOverlapPairs()

getIndividuals

public HashSet<Individual> getIndividuals()

setIndividuals

public void setIndividuals(HashSet<Individual> individuals)

setisFromTC

public void setisFromTC(boolean isFromTC)

getisFromTC

public boolean getisFromTC()

getancestors

public HashSet<Pheno> getancestors()

setancestors

public void setancestors(HashSet<Pheno> ancestors)

setNonTCIndividualSize

public void setNonTCIndividualSize(int NonTCIndividualSize)

getNonTCIndividualSize

public int getNonTCIndividualSize()