owltools.graph

Class OWLGraphWrapperBasic

java.lang.Object

owltools.graph.OWLGraphWrapperBasic

Direct Known Subclasses:

OWLGraphWrapperExtended

public class OWLGraphWrapperBasic
extends Object

Basic methods for handling multiple OWLOntology objects as one graph. Provide methods to add, remove, or merge support ontologies.

See Also:

OWLGraphWrapper

Field Summary

Fields

Modifier and Type	Field and Description
protected org.semanticweb.owlapi.model.OWLOntology	sourceOntology
protected Set<org.semanticweb.owlapi.model.OWLOntology>	supportOntologySet

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	OWLGraphWrapperBasic(org.semanticweb.owlapi.model.OWLOntology ontology)
protected	OWLGraphWrapperBasic(String iri)

Method Summary

Methods

Modifier and Type	Method and Description
void	addImport(org.semanticweb.owlapi.model.OWLOntology extOnt) adds an imports declaration between the source ontology and extOnt
void	addImportsFromSupportOntologies()
void	addSupportOntologiesFromImportsClosure() Each ontology in the import closure of the source ontology is added to the list of support ontologies
void	addSupportOntologiesFromImportsClosure(boolean doForAllSupportOntologies) Each ontology in the import closure of the source ontology (and the import closure of each existing support ontology, if doForAllSupportOntologies is true) is added to the list of support ontologies
void	addSupportOntology(org.semanticweb.owlapi.model.OWLOntology o)
Set<org.semanticweb.owlapi.model.OWLOntology>	getAllOntologies() in general application code need not call this - it is mostly used internally
Set<org.semanticweb.owlapi.model.OWLClass>	getAllOWLClasses() Fetch all OWLClass objects from all ontologies.
Set<org.semanticweb.owlapi.model.OWLObject>	getAllOWLObjects() fetches all classes, individuals and object properties in all ontologies.
Set<org.semanticweb.owlapi.model.OWLSubClassOfAxiom>	getAllOWLSubClassOfAxiomsForSubClass(org.semanticweb.owlapi.model.OWLClass owlClass) Fetch all OWLSubClassOfAxiom axioms for a given subClass (OWLClass) from all ontologies.
Set<org.semanticweb.owlapi.model.OWLSubClassOfAxiom>	getAllOWLSubClassOfAxiomsForSuperClass(org.semanticweb.owlapi.model.OWLClass owlClass) Fetch all OWLSubClassOfAxiom axioms for a given superClass (OWLClass) from all ontologies.
org.semanticweb.owlapi.model.OWLDataFactory	getDataFactory()
org.semanticweb.owlapi.model.OWLOntologyManager	getManager()
org.semanticweb.owlapi.model.OWLOntology	getSourceOntology() Every OWLGraphWrapper objects wraps zero or one source ontologies.
Set<org.semanticweb.owlapi.model.OWLOntology>	getSupportOntologySet() all operations are over a set of ontologies - the source ontology plus any number of supporting ontologies.
void	mergeImportClosure() note: may move to mooncat
void	mergeImportClosure(boolean isRemovedImportsDeclarations)
void	mergeOntology(org.semanticweb.owlapi.model.OWLOntology extOnt) Adds all axioms from extOnt into source ontology
void	mergeOntology(org.semanticweb.owlapi.model.OWLOntology extOnt, boolean isRemoveFromSupportList)
void	mergeSupportOntology(String ontologyIRI)
void	mergeSupportOntology(String ontologyIRI, boolean isRemoveFromSupportList)
void	remakeOntologiesFromImportsClosure()
void	remakeOntologiesFromImportsClosure(org.semanticweb.owlapi.model.IRI ontologyIRI)
void	removeSupportOntology(org.semanticweb.owlapi.model.OWLOntology o)
void	setSourceOntology(org.semanticweb.owlapi.model.OWLOntology sourceOntology)
void	setSupportOntologySet(Set<org.semanticweb.owlapi.model.OWLOntology> supportOntologySet)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

sourceOntology

protected org.semanticweb.owlapi.model.OWLOntology sourceOntology

supportOntologySet

protected Set<org.semanticweb.owlapi.model.OWLOntology> supportOntologySet

Constructor Detail

OWLGraphWrapperBasic

protected OWLGraphWrapperBasic(org.semanticweb.owlapi.model.OWLOntology ontology)

OWLGraphWrapperBasic

protected OWLGraphWrapperBasic(String iri)
                        throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

Method Detail

addImport

public void addImport(org.semanticweb.owlapi.model.OWLOntology extOnt)

adds an imports declaration between the source ontology and extOnt

Parameters:

extOnt -

mergeOntology

public void mergeOntology(org.semanticweb.owlapi.model.OWLOntology extOnt)
                   throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Adds all axioms from extOnt into source ontology

Parameters:

extOnt -

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

mergeOntology

public void mergeOntology(org.semanticweb.owlapi.model.OWLOntology extOnt,
                 boolean isRemoveFromSupportList)
                   throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

mergeSupportOntology

public void mergeSupportOntology(String ontologyIRI,
                        boolean isRemoveFromSupportList)
                          throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

mergeSupportOntology

public void mergeSupportOntology(String ontologyIRI)
                          throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

getSourceOntology

public org.semanticweb.owlapi.model.OWLOntology getSourceOntology()

Every OWLGraphWrapper objects wraps zero or one source ontologies.

Returns:

ontology

setSourceOntology

public void setSourceOntology(org.semanticweb.owlapi.model.OWLOntology sourceOntology)

getSupportOntologySet

public Set<org.semanticweb.owlapi.model.OWLOntology> getSupportOntologySet()

all operations are over a set of ontologies - the source ontology plus any number of supporting ontologies. The supporting ontologies may be drawn from the imports closure of the source ontology, although this need not be the case.

Returns:

set of support ontologies

setSupportOntologySet

public void setSupportOntologySet(Set<org.semanticweb.owlapi.model.OWLOntology> supportOntologySet)

addSupportOntology

public void addSupportOntology(org.semanticweb.owlapi.model.OWLOntology o)

removeSupportOntology

public void removeSupportOntology(org.semanticweb.owlapi.model.OWLOntology o)

addSupportOntologiesFromImportsClosure

public void addSupportOntologiesFromImportsClosure()

Each ontology in the import closure of the source ontology is added to the list of support ontologies

addSupportOntologiesFromImportsClosure

public void addSupportOntologiesFromImportsClosure(boolean doForAllSupportOntologies)

Each ontology in the import closure of the source ontology (and the import closure of each existing support ontology, if doForAllSupportOntologies is true) is added to the list of support ontologies

Parameters:

doForAllSupportOntologies -

addImportsFromSupportOntologies

public void addImportsFromSupportOntologies()

remakeOntologiesFromImportsClosure

public void remakeOntologiesFromImportsClosure()
                                        throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

remakeOntologiesFromImportsClosure

public void remakeOntologiesFromImportsClosure(org.semanticweb.owlapi.model.IRI ontologyIRI)
                                        throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

mergeImportClosure

public void mergeImportClosure()
                        throws org.semanticweb.owlapi.model.OWLOntologyCreationException

note: may move to mooncat

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

mergeImportClosure

public void mergeImportClosure(boolean isRemovedImportsDeclarations)
                        throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

getAllOntologies

public Set<org.semanticweb.owlapi.model.OWLOntology> getAllOntologies()

in general application code need not call this - it is mostly used internally

Returns:

union of source ontology plus all supporting ontologies plus their import closures

getDataFactory

public org.semanticweb.owlapi.model.OWLDataFactory getDataFactory()

getManager

public org.semanticweb.owlapi.model.OWLOntologyManager getManager()

getAllOWLObjects

public Set<org.semanticweb.owlapi.model.OWLObject> getAllOWLObjects()

fetches all classes, individuals and object properties in all ontologies. This set is a copy. Changes are not reflected in the ontologies.

Returns:

all named objects

getAllOWLClasses

public Set<org.semanticweb.owlapi.model.OWLClass> getAllOWLClasses()

Fetch all OWLClass objects from all ontologies. This set is a copy. Changes are not reflected in the ontologies.

Returns:

set of all OWLClass

getAllOWLSubClassOfAxiomsForSubClass

public Set<org.semanticweb.owlapi.model.OWLSubClassOfAxiom> getAllOWLSubClassOfAxiomsForSubClass(org.semanticweb.owlapi.model.OWLClass owlClass)

Fetch all OWLSubClassOfAxiom axioms for a given subClass (OWLClass) from all ontologies. This set is a copy. Changes are not reflected in the ontologies.

Parameters:

owlClass -

Returns:

set of all OWLSubClassOfAxiom

getAllOWLSubClassOfAxiomsForSuperClass

public Set<org.semanticweb.owlapi.model.OWLSubClassOfAxiom> getAllOWLSubClassOfAxiomsForSuperClass(org.semanticweb.owlapi.model.OWLClass owlClass)

Fetch all OWLSubClassOfAxiom axioms for a given superClass (OWLClass) from all ontologies. This set is a copy. Changes are not reflected in the ontologies.

Parameters:

owlClass -

Returns:

set of all OWLSubClassOfAxiom