Package owltools.gaf.io

Interface Summary

Interface	Description
PseudoRdfXmlWriter.ProgressReporter

Class Summary

Class	Description
AbstractGafWriter	General utility to write a GafDocument or GeneAnnotation.
AbstractXmlWriter	Helper to write properly formated XML using an XMLStreamWriter.
GafWriter	Write a Gene Annotation File to a given stream or file.
GafWriter.BufferedGafWriter	Helper class to create a list of all GeneAnnotation lines, excluding any headers. Can be used for sorting.
GpadWriter
GpiWriter
OpenAnnotationRDFWriter	Generates and writes RDF Models conforming to http://www.openannotation.org/spec/core/core.html from GeneAnnotation objects.
PseudoRdfXmlWriter	Java implementation to create a legacy pseudo RDF XML file for GO terms and gene annotations.
XgmmlWriter	Generates Xgmml for import into Cytoscape